Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs35125481 chr8:6185703 C/G 2.29E-5 498 21.87 24.03 7.72 KM Plot
LGG rs35198492 chr8:6184906 G/T 2.29E-5 497 21.85 24.07 7.72 KM Plot
LGG rs35209325 chr8:143453732 G/A 5.4E-6 502 23.58 18.9 3.7 KM Plot
LGG rs35241162 chr8:6185550 G/C 2.29E-5 498 21.87 24.03 7.72 KM Plot
LGG rs35248319 chr8:6184778 A/G 2.29E-5 498 21.87 24.03 7.72 KM Plot
LGG rs35269835 chr8:6184883 C/A 2.28E-5 498 22.12 23.93 7.72 KM Plot
LGG rs35296654 chr8:6184896 C/A 2.29E-5 498 21.87 24.03 7.72 KM Plot
LGG rs35370435 chr10:898205 T/C 2.31E-7 506 21.7 25.83 14.15 KM Plot
LGG rs35394603 chr10:941018 C/T 5.28E-7 507 21.83 24.23 14.43 KM Plot
LGG rs35417839 chr8:143439117 G/T 7.01E-6 499 23.58 19.57 3.7 KM Plot
LGG rs35443149 chr10:879776 C/T 3.79E-6 509 21.7 25.18 14.43 KM Plot
LGG rs35448789 chr8:6184547 G/C 2.29E-5 498 21.87 24.03 7.72 KM Plot
LGG rs35470512 chr14:24420117 ACT/A 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs35479345 chr4:531141 G/A 5.68E-5 496 21.3 27.37 12.37 KM Plot
LGG rs35481916 chr10:907441 CT/C 3.25E-8 506 21.77 24.52 14.15 KM Plot